Notes from Dr. David A. Jones - January 27, 1997

     Genetics is largely a problem solving discipline.  Obviously there are basic facts that need
to be known and understood before one can begin to solve genetical problems, but what we have
to do is to take the fullest advantage of what is known, or given as fact when answering a
genetical problem, and then develop our answer from that basic information.  The best advice I
can give is - write down what is known and take the problem forward from there.

     Those of you who have attended the discussion sessions will understand that this is
precisely the way Ann has been  tackling' the problems.  She is not writing things down just so
that you can take notes - she is showing you how she sets about genetic problems and how we
both hope you will deal with them.  

     With your first test not all that far away, I have been preparing it using both my own notes
and  Campbell'.  To help you with your revision I will highlight the sections of Chapters 11
through 16 that you should study and those that you can either ignore or not study in detail.  

     In 4th edition of Campbell each section begins with a blue square.  Folks with the 3rd
Edition of Campbell should see below.

     Chapter ll.  Good revision should cover the sections beginning on pages 204, 205 (for the
second test, not for the first), 206, 207, 217 (the last section is general knowledge with which you
should all be familiar anyway).

     You need not review, for the tests, sections beginning on page 201, 212, 214, 216.  They
do contain, however, points that will help your understanding of the whole process of nuclear and
cell division.

     Chapter 12.  Study all of it.

     Chapter 13.  Ignore 1) the trihybrid problem on page 247 and 2) the polygenic inheritance
on page 251 (I'll deal with this later in the course).  I expect you will find the last 2+ pages (end of
256, 257 and 258) interesting, but I will not examine your knowledge of them. 

     Chapter 14.  Study all except 1) the section  the phenotypic effects of some genes depend
on whether they were inherited from the mother or the father' and ii) the section on Extranuclear
inheritance.

     Chapter 15.  Study all of it.

     Chapter 16.  We will not be able to deal with all of this by the end of Thursday's lecture. 
There is a lot of words, but nothing particularly difficult in principle in this chapter.  I do not
expect you to memorize Fig. 16.5.  Even if I get beyond the first part of page 304, I will not ask
you questions on the later part of this chapter in the first test.

     My main purpose in talking about the  2 test was to familiarize you with the test, and
some of the background, before you need to use it in your lab classes.  I hope you are able to see
how we can do some hypothesis testing and use the results of the analysis to help us interpret the
data.  Although I had to go into some detail in order to illustrate the principles, it is the principles
that are more important at this stage.  Thus I expect you to know that 1) you use the   2 test to
analyze discontinuous variation i.e. 3:1, 9:3:3:1 types of situation, 2) the threshold level of
probability is P = 0.05 below which we prefer to reject the null hypothesis and 3) the null
hypothesis is the basis for calculating the expected values.

3rd Edition

     Chapter 11 pp 221-222 (omit Bacterial reproduction at this stage), pp 223-242 (omit 225,
228-235 and Fig. 11.16).   Abnormal Cell Division' to the end of the chapter is largely general
knowledge with which you should all be familiar anyway.  Again page 225, 228-235 will help
your understanding, but you will not be tested on the details on this page.

     Chapter 12.  Study all of it.

     Chapter 13.  Study all of it except for polygenic inheritance (page 270).  I will not be
testing the Genetic Screening and Counseling and the other sections between there and the end of
the chapter, although I expect you will find them interesting.

     Chapter 14.  Study all except Parental Imprinting of Genes and Extra Nuclear Inheritance.

     Chapter 15.  Study all of it.

     Chapter 16.  Study up to page 322.  Stop before A Closer Look at Transcription.  I may
get further than this in the lectures, but I will not ask questions on the latter part of the chapter in
the first test.  I do not expect you to memorize Fig. 16.5.


Additional Genetical Problems - January 28, 1997


For those of you who like genetical problems, or feel you need
more practice, here are 22 that have been around for a long time
but are as relevant today as they were nearly 40 years ago when
the list was first compiled.  I have some more that I will add
later when I have finished transcribing them from an old
duplicator-produced copy.

 

1.   Amongst a family of plants uniformly about one metre tall,
     two individuals were observed which were only 0.5 metres
     tall.  Two of the tall plants and both of the short plants
     were self pollinated and their progeny sown out the
     following year, when all the plants turned out to be one
     metre tall.  What do you  conclude from this result?

2.       A rat from a pure-breeding strain with wild fur colour
         (i.e.agouti) was crossed to one from a pure-breeding strain
         with black fur.  All F1's had agouti fur.  Assuming this
         colour difference to be controlled by two alleles of a
         single gene, give the genotypes of the two parents and of
         the F1's. The F1 rats were then intercrossed and gave a
         total of 48 F2 offspring.  How many of these would you
         expect to have agouti and how many black fur?

3.       Six of the F2 with agouti phenotype were backcrossed to the
         pure breeding black strain.  Four of the families contained 3
         and 2, 3 and 3, 2 and 4, and 2 and 1 agouti/black offspring
         respectively; the other two matings gave respectively 5 and 6
         offspring all of which were agouti. What do you conclude from
         these results?

4.       Mendel showed that in the garden pea grey seed colour is
         dominant to white seed colour.  Suggest the probable genotypes
         of the parents in each of the following crosses: (Use G for
         grey; g for white.)

                   Parents              Progeny
                                  Grey           White
              (a) grey x grey      217             69
              (b) grey x white     153              0
              (c) grey x white     184            191
              (d)white x white       0            133
              (e) grey x grey      118              0


5.       Three stocks of Drosophila "A", "B" and "C" all breed true for
         eyes which are reduced in size  and irregular in shape when
         compared to wild-type stocks.  Furthermore, the stocks cannot
         be distinguished by inspection.  On crossing "A" with a true-breeding wild-type stock all the F1 had reduced, irregular
         eyes like stock "A".  On crossing "B" with wild-type all the F1
         had large regular eyes like wild-type.  On crossing "C" with
         wild-type all the F1 had large regular eyes like wild-type.
         What can you deduce from these results?  Are the mutant
         allelomorphs in these stocks dominant or recessive to their
         corresponding wild-type allelomorphs?

6.       Both parents of a blue-eyed man are brown-eyed.  He marries a
         brown-eyed woman, one of whose parents was brown-eyed, the
         other blue, and who has a blue-eyed brother.  The man and
         woman in question have a brown-eyed child.  Give the genotypes
         of the members of this pedigree assuming brown eyes to be
         dominant to blue eyes.

7.       The human blood phenotypes A,B and 0 are determined by a single 
         gene I with three allelomorphs:  Ia, Ib and Io.  Ia and IB are 
         codominant, but both behave as though fully dominant over Io.

         Thus:-     Genotype          Phenotypes

                      IAIA                A
                      IAIO                A

                      IBIB                B
                      IBIO                 B

                      IAIB                AB
                      IOIO                 0

         If a woman with an AB phenotype marries a man of blood group     0, what phenotypes are possible among their children, and what
         will be their genotypes?

         Similarly if an A woman marries a B man, what are the possible
         phenotypes and genotypes of their offspring?

8.       The capacity to taste phenylthlocarbamide (P.T.C.) is       determined by a single gene; to those carrying the dominant      allelomorph T a solution of P.T.C. has a bitter taste, while
         homozygous recessive tt individuals find that the solution  tastes only of brackish water.  A man of blood group A who  was a "taster" and whose wife was also a taster had children
         of the following phenotypes:-

                        B taster : 0 non-taster : AB taster

         What were the genotypes of the man, wife and children?
 
9.       In Mirabilis (four o'clock plant) the allele for red       
         flowers (w+) is incompletely dominant to that for white
         flowers (w) (i.e.individuals with the genotype w+/w are
         pink).  One pink plant is crossed to a red, another to a    
         white one. Give the genotypic and phenotypic ratios in which
         the offspring are expected to be produced in each case.

10.      Which of the following men would be excluded as a possible
         father of a child whose phenotype is 0 Rh+ MN and whose     
         mother's phenotype is 0 rh- MN?

        (a) AB Rh+ M   (b) A Rh + MN   (c) B rh- MN   (d) 0 rh- N

11.      In the broad bean a variety with green seeds and white hilum
         (point of attachment of seed to the placenta) was crossed 
         with a variety having yellow seeds and a black hilum.  The  F1 
         plants all carried yellow seeds with black hilums.   The                                                             
         F2 plants were classified as follows:-

              93 carried yellow seeds with black hilums
              31 carried yellow seeds with white hilums
              28 carried green seeds with black hilums
      and  8 carried green seeds with white hilums

         What can you deduce about the genes controlling these       
         characters?  (Note that the seed colors here are properties      of the seed coat and are determined by the genotype of the                                                         maternal tissue.  What complications does this present for scoring the characters.)

12.      In tomatoes the allele for purple stem (P) is dominant to   
         green stem (p) and that for "cut" leaves (C)is dominant to
         "potato" leaves (c).  The following results were obtained in
         a series of crosses.

                         Parents                            Progeny

                                                Purple    Purple  Green  Green
                                                  cut     potato   cut   potato


               (a) purple cut x green cut        321       101    310    107

               (b) purple cut x purple potato    219       207     64     71

               (c) purple cut x green cut        722       231      0      0

               (D) purple cut x green potato     404         0    387      0
               (e) purple potato x green cut      70        91     86     77
         What are the probable genotypes of the parents?
13.      The stocks of Drosophila "B" and "C" mentioned in problem 5      were intercrossed; all the F1 had large and regular eyes 
         like wild-type. What conclusion can you draw from this?


14.      With reference to problems 5 and 13 a fourth stock "D" was
         available which phenotypically was like "B" and "C", but
         rather more extreme in expression.  "D" behaved like "B" and
         "C" on crossing to wild-type; on crossing with "B" it gave
         progeny with reduced and irregular eyes; and also on crossing
         with "C". What is the genotype of "D"?
15.      What will be the proportions of phenotyps and genotypes in
         the F2 of the cross between "D" and wild-type?  What will be
         the corresponding proportions if we find that tho difference
         between the phenotypes of stocks "B", "C" and "D" are too
         slight to allow accurate classification?
16.      Four individuals with reduced and irregular eyes from the F2
         in the last problem (call them e, f, g, and h) were crossed      
         to the stocks "B" and "C" with the following results:-


                     Eyes                           Eyes
               Wild    Reduced                Wild        Reduced

    "B" x e      0       51      "C" x e       30            22
    "B" x f     62        0      "C" x f        0            41
    "B" x g      0       65      "C" x g        0            69
    "B" x h      0       43      "C" x h       52             0

         What are the genotypes of e, f, g and h respectively?

17.  In a cross between two types of oat, one with black hulled seeds,
     the other with white hulled seeds, the F1 all had black-hulled     
     seeds. Inter-crossing the F1 gave an F2 as follows:- 418 black-       
     hulled, 106 grey-hulled and 36 white-hulled.  Explain the   
     inheritance of hull-colour in these crosses.

18.      Madill et al. (Can. J. Genet. Cytol.6: 467-471, 1964) studied the
         inheritance of immunity to flax rust (Melampsora lini) in two
         lines of flax, F 8-2 and F 13-4.  Both lines were crossed with the
         variety Bison which is susceptible to all known North American
         races of flax rust, and the following results were obtained.

         Bison x F 8-2     F2         157 immune      45 susceptible
         Bison x F 13-4    F2         699 immune     149 susceptible

         Analyse and interpret these results.
         Suggest any further crosses which should be made to complete this
         study and help to decide between the alternative results. 

19.      The presence of glands containing the toxic substance gossypol on
         the leaves and cotyledons of cotton lowers the economic value of
         the crop. (Rhyne, J. Hered, 53 115, 1962).

         Three varieties of cotton, Empire, Acala and BBR, each having
         glanded leaves, were crossed with a glandless (homozygous)inbred
         line L 7-14 and were lntercrossed.  The following results were        obtained.

Empire  x L 7-14    F1 glanded    F2    93 glanded       5 glandless
Acala   x L 7-14    F1 glanded    F2    80 glanded      25 glandless
BBR     x L 7-14    F1 glanded    F2    49 glanded      16 glandless
Empire  x Acala     F1 glanded    F2   all glanded       ----
Empire  x BBR       F1 glanded    F2   all glanded       ----
BBR     x Acala     F1 glanded    F2    78 glanded        6 glandless

         Analyse and interpret these results.

         Outline a method for the breeding of glandless plants in the
         3 varieties Empire, Acala and BBR.

20.  Of two pure-breeding stocks of a small mammal one had long and 
     the other had short fur.  Reciprocal crosses were made between the 
     two stocks and the F1's and F2's gave the following results:-


    Parents       Female Long x Short Male      Female Short x Long Male
    Phenotypes           long  short                   long     short
    F1 Females            36     0                      49        0
    Males                 32     0                       0       52
         
    F2 Females            47     0                      26       25
    Males                21    24                      23        22

What can you say about the genetic control of this character?


21.      One of the most difficult problems is choosing the right
         material to carry out genetic experiments.  Having chosen
         the material it is often necessary to do some pilot breeding
         in order to obtain pure breeding strains or special stocks. 
         The tests carried out in questions 16 and 19 are of this
         kind.  This problem and the next one are concerned with
         stock building.

         Suppose in question 11 we had started with one variety with
        green seeds and black hilum and another with yellow seeds  
        and white hilum, and we wanted a pure breeding plant with  
        yellow seeds and black hilum.  How can this be done in the 
        shortest time?  (Beware, the note at the end of question 11
        is important here.)

22.      Starting with three stocks of flies, one homozygous for
         vestigial wing, another homozygous for scariet eye and the
         third homozygous for ebony body, how can one obtain the
         triple recessive homozygote?  Assume that the three loci are
         not genetically linked.

Answers to Supplementary Genetical Problems
Study Guide to Test 2
Notes for February 26 Test